3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUAAG*CGAAAG
Length
11 nucleotides
Bulged bases
7OSM|1|25S|A|1588, 7OSM|1|25S|A|1589
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_144 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.0658
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

7OSM|1|25S|C|1532
7OSM|1|25S|U|1533
7OSM|1|25S|A|1534
7OSM|1|25S|A|1535
7OSM|1|25S|G|1536
*
7OSM|1|25S|C|1585
7OSM|1|25S|G|1586
7OSM|1|25S|A|1587
7OSM|1|25S|A|1588
7OSM|1|25S|A|1589
7OSM|1|25S|G|1590

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain 58S
5.8S ribosomal RNA; 5.8S rRNA
Chain eL34
60S ribosomal protein L34-A
Chain eL37
Ribosomal protein L37
Chain eL39
60S ribosomal protein L39
Chain uL2
60S ribosomal protein L2-B

Coloring options:


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