IL_7OSM_158

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

7OSM|1|25S|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_158 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0833

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|A|1901
7OSM|1|25S|G|1902
7OSM|1|25S|U|1903
7OSM|1|25S|C|1904
7OSM|1|25S|G|1905
7OSM|1|25S|G|1906
*
7OSM|1|25S|C|2333
7OSM|1|25S|U|2334
7OSM|1|25S|G|2335
7OSM|1|25S|U|2336

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL14

60S ribosomal protein L23-B

Chain uL3

60S ribosomal protein L3