IL_7OSM_159

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7OSM|1|25S|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_159 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1041

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|C|1918
7OSM|1|25S|G|1919
7OSM|1|25S|U|1920
7OSM|1|25S|A|1921
7OSM|1|25S|A|1922
7OSM|1|25S|C|1923
*
7OSM|1|25S|G|1928
7OSM|1|25S|G|1929
7OSM|1|25S|A|1930
7OSM|1|25S|U|1931
7OSM|1|25S|A|1932
7OSM|1|25S|A|1933
7OSM|1|25S|G|1934

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain eL41

eL41

Chain eL43

60S ribosomal protein L43-A