IL_7OSM_163

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7OSM|1|25S|U|2159, 7OSM|1|25S|U|2175, 7OSM|1|25S|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_163 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0729

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7OSM|1|25S|C|2156
7OSM|1|25S|G|2157
7OSM|1|25S|A|2158
7OSM|1|25S|U|2159
7OSM|1|25S|G|2160
7OSM|1|25S|G|2161
*
7OSM|1|25S|U|2173
7OSM|1|25S|G|2174
7OSM|1|25S|U|2175
7OSM|1|25S|U|2176
7OSM|1|25S|G|2177
7OSM|1|25S|A|2178
7OSM|1|25S|C|2179
7OSM|1|25S|G|2180

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain eL43

60S ribosomal protein L43-A

Chain uL2

60S ribosomal protein L2-B