IL_7OSM_168

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_168 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.116

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OSM|1|25S|U|2211
7OSM|1|25S|C|2212
7OSM|1|25S|A|2213
7OSM|1|25S|A|2214
7OSM|1|25S|A|2215
7OSM|1|25S|G|2216
7OSM|1|25S|U|2217
*
7OSM|1|25S|A|2228
7OSM|1|25S|A|2229
7OSM|1|25S|C|2230
7OSM|1|25S|C|2231
7OSM|1|25S|A|2232
7OSM|1|25S|A|2233
7OSM|1|25S|G|2234

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain PSIT

Transfer RNA; tRNA

Chain eL36

60S ribosomal protein L36-A

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1