IL_7OSM_170

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7OSM|1|25S|A|2281, 7OSM|1|25S|C|2287, 7OSM|1|25S|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_170 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0868

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7OSM|1|25S|C|2277
7OSM|1|25S|C|2278
7OSM|1|25S|A|2279
7OSM|1|25S|A|2280
7OSM|1|25S|A|2281
7OSM|1|25S|U|2282
7OSM|1|25S|G|2283
7OSM|1|25S|C|2284
7OSM|1|25S|C|2285
7OSM|1|25S|U|2286
7OSM|1|25S|C|2287
7OSM|1|25S|G|2288
*
7OSM|1|25S|C|2304
7OSM|1|25S|G|2305
7OSM|1|25S|C|2306
7OSM|1|25S|G|2307

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain eL41

eL41