3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUGAAGC*GGGU
Length
11 nucleotides
Bulged bases
7OSM|1|25S|G|2522, 7OSM|1|25S|G|2585, 7OSM|1|25S|G|2586
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_176 not in the Motif Atlas
Homologous match to IL_5TBW_096
Geometric discrepancy: 0.1371
The information below is about IL_5TBW_096
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74114.1
Basepair signature
cWW-cWS-cWW-L-R
Number of instances in this motif group
2

Unit IDs

7OSM|1|25S|A|2520
7OSM|1|25S|U|2521
7OSM|1|25S|G|2522
7OSM|1|25S|A|2523
7OSM|1|25S|A|2524
7OSM|1|25S|G|2525
7OSM|1|25S|C|2526
*
7OSM|1|25S|G|2584
7OSM|1|25S|G|2585
7OSM|1|25S|G|2586
7OSM|1|25S|U|2587

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain 58S
5.8S ribosomal RNA; 5.8S rRNA
Chain eL8
60S ribosomal protein L8-A
Chain uL2
60S ribosomal protein L2-B
Chain uL23
60S ribosomal protein L25

Coloring options:


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