IL_7OSM_199

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

7OSM|1|25S|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_199 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1059

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

7OSM|1|25S|A|3103
7OSM|1|25S|U|3104
7OSM|1|25S|U|3105
7OSM|1|25S|A|3106
7OSM|1|25S|U|3107
*
7OSM|1|25S|A|3127
7OSM|1|25S|G|3128
7OSM|1|25S|A|3129
7OSM|1|25S|A|3130
7OSM|1|25S|U|3131

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL40

Ubiquitin

Chain uL13

60S ribosomal protein L16-A

Chain uL6

60S ribosomal protein L9-A