IL_7OSM_211

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_211 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0914

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7OSM|1|25S|U|3332
7OSM|1|25S|G|3333
7OSM|1|25S|U|3334
7OSM|1|25S|A|3335
7OSM|1|25S|A|3336
7OSM|1|25S|G|3337
*
7OSM|1|25S|C|3367
7OSM|1|25S|U|3368
7OSM|1|25S|G|3369
7OSM|1|25S|A|3370
7OSM|1|25S|G|3371

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL24

60S ribosomal protein L24-A

Chain eL31

BJ4_G0008090.mRNA.1.CDS.1

Chain uL3

60S ribosomal protein L3