IL_7OSM_213

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_213 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1677

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7OSM|1|25S|A|3342
7OSM|1|25S|G|3343
7OSM|1|25S|A|3344
7OSM|1|25S|G|3345
*
7OSM|1|25S|C|3360
7OSM|1|25S|G|3361
7OSM|1|25S|A|3362
7OSM|1|25S|U|3363

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL22

60S ribosomal protein L22-A

Chain eS8

40S ribosomal protein S8