3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACCGAGUAG*CGAAACU
Length
16 nucleotides
Bulged bases
7OSM|1|AB|C|73
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_222 not in the Motif Atlas
Homologous match to IL_5TBW_377
Geometric discrepancy: 0.0913
The information below is about IL_5TBW_377
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7OSM|1|AB|A|72
7OSM|1|AB|C|73
7OSM|1|AB|C|74
7OSM|1|AB|G|75
7OSM|1|AB|A|76
7OSM|1|AB|G|77
7OSM|1|AB|U|78
7OSM|1|AB|A|79
7OSM|1|AB|G|80
*
7OSM|1|AB|C|100
7OSM|1|AB|G|101
7OSM|1|AB|A|102
7OSM|1|AB|A|103
7OSM|1|AB|A|104
7OSM|1|AB|C|105
7OSM|1|AB|U|106

Current chains

Chain AB
5S rRNA

Nearby chains

Chain 25S
Large subunit ribosomal RNA; LSU rRNA
Chain eL20
60S ribosomal protein L20
Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain uL16
60S ribosomal protein L10
Chain uL30
60S ribosomal protein L7-A

Coloring options:


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