IL_7OSM_222
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 7OSM|1|AB|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_222 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0913
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7OSM|1|AB|A|72
7OSM|1|AB|C|73
7OSM|1|AB|C|74
7OSM|1|AB|G|75
7OSM|1|AB|A|76
7OSM|1|AB|G|77
7OSM|1|AB|U|78
7OSM|1|AB|A|79
7OSM|1|AB|G|80
*
7OSM|1|AB|C|100
7OSM|1|AB|G|101
7OSM|1|AB|A|102
7OSM|1|AB|A|103
7OSM|1|AB|A|104
7OSM|1|AB|C|105
7OSM|1|AB|U|106
Current chains
- Chain AB
- 5S rRNA
Nearby chains
- Chain 25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain eL20
- 60S ribosomal protein L20
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain uL16
- 60S ribosomal protein L10
- Chain uL30
- 60S ribosomal protein L7-A
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