3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGUC*GCG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_235 not in the Motif Atlas
Geometric match to IL_4N0T_004
Geometric discrepancy: 0.3518
The information below is about IL_4N0T_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

7OSM|1|25S|U|182
7OSM|1|25S|G|183
7OSM|1|25S|U|184
7OSM|1|25S|C|185
*
7OSM|1|25S|G|232
7OSM|1|25S|C|233
7OSM|1|25S|G|234

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain 58S
5.8S ribosomal RNA; 5.8S rRNA
Chain eL37
Ribosomal protein L37
Chain uL24
60S ribosomal protein L26-A

Coloring options:


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