IL_7OSM_237

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*UGAG

Length

7 nucleotides

Bulged bases

7OSM|1|25S|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_237 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2975

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7OSM|1|25S|C|752
7OSM|1|25S|C|753
7OSM|1|25S|G|754
*
7OSM|1|25S|U|778
7OSM|1|25S|G|779
7OSM|1|25S|A|780
7OSM|1|25S|G|781

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL18

BJ4_G0033900.mRNA.1.CDS.1

Chain uL15

60S ribosomal protein L28