IL_7OSM_245

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_245 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0846

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|25S|G|2823
7OSM|1|25S|G|2824
7OSM|1|25S|C|2825
7OSM|1|25S|U|2826
*
7OSM|1|25S|G|2863
7OSM|1|25S|A|2864
7OSM|1|25S|U|2865
7OSM|1|25S|U|2866
7OSM|1|25S|C|2867

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL29

60S ribosomal protein L29

Chain uL16

60S ribosomal protein L10