IL_7OSM_250

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_250 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.143

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OSM|1|18S|G|1540
7OSM|1|18S|G|1541
7OSM|1|18S|G|1542
7OSM|1|18S|A|1543
7OSM|1|18S|U|1544
7OSM|1|18S|A|1545
*
7OSM|1|18S|U|1566
7OSM|1|18S|U|1567
7OSM|1|18S|C|1568
7OSM|1|18S|A|1569
7OSM|1|18S|A|1570
7OSM|1|18S|C|1571

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS19

40S ribosomal protein S19-A

Chain uS13

40S ribosomal protein S18-B

Chain uS7

Rps5p