IL_7OSM_253

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_253 not in the Motif Atlas

Geometric match to IL_5J7L_393

Geometric discrepancy: 0.3207

The information below is about IL_5J7L_393

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7OSM|1|25S|U|177
7OSM|1|25S|U|178
*
7OSM|1|25S|A|238
7OSM|1|25S|G|239
7OSM|1|25S|U|240
7OSM|1|25S|G|241

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL13

60S ribosomal protein L13

Chain eL37

Ribosomal protein L37

Chain uL29

BJ4_G0044250.mRNA.1.CDS.1