IL_7OW7_035

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUC*GCCCGG

Length

10 nucleotides

Bulged bases

7OW7|1|A|C|1214, 7OW7|1|A|C|1215

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OW7_035 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.354

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7OW7|1|A|C|1081
7OW7|1|A|C|1082
7OW7|1|A|U|1083
7OW7|1|A|C|1084
*
7OW7|1|A|G|1213
7OW7|1|A|C|1214
7OW7|1|A|C|1215
7OW7|1|A|C|1216
7OW7|1|A|G|1217
7OW7|1|A|G|1218

Current chains

Chain A

28S rRNA

Nearby chains

Chain V

60S ribosomal protein L29

Chain m

60S ribosomal protein L7