IL_7OW7_093

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7OW7|1|A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OW7_093 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0855

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7OW7|1|A|C|2867
7OW7|1|A|G|2868
7OW7|1|A|U|2869
7OW7|1|A|A|2870
7OW7|1|A|A|2871
7OW7|1|A|C|2872
*
7OW7|1|A|G|2877
7OW7|1|A|G|2878
7OW7|1|A|A|2879
7OW7|1|A|U|2880
7OW7|1|A|A|2881
7OW7|1|A|A|2882
7OW7|1|A|G|2883

Current chains

Chain A

28S rRNA

Nearby chains

Chain j

60S ribosomal protein L37a