IL_7OW7_125

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OW7_125 not in the Motif Atlas

Geometric match to IL_5TBW_106

Geometric discrepancy: 0.1597

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7OW7|1|A|C|4412
7OW7|1|A|C|4413
7OW7|1|A|A|4414
7OW7|1|A|A|4415
7OW7|1|A|G|4416
*
7OW7|1|A|C|4426
7OW7|1|A|G|4427
7OW7|1|A|A|4428
7OW7|1|A|C|4429
7OW7|1|A|G|4430

Current chains

Chain A

28S rRNA

Nearby chains

Chain p

60S ribosomal protein L10-like