IL_7OW7_159

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OW7_159 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2733

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7OW7|1|A|A|5014
7OW7|1|A|G|5015
7OW7|1|A|A|5016
7OW7|1|A|G|5017
*
7OW7|1|A|C|5032
7OW7|1|A|G|5033
7OW7|1|A|A|5034
7OW7|1|A|U|5035

Current chains

Chain A

28S rRNA

Nearby chains