IL_7OYD_006
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.0819
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|C|81
7OYD|1|5|U|82
7OYD|1|5|C|83
7OYD|1|5|A|84
7OYD|1|5|G|85
7OYD|1|5|U|86
7OYD|1|5|A|87
7OYD|1|5|A|88
*
7OYD|1|5|U|96
7OYD|1|5|G|97
7OYD|1|5|A|98
7OYD|1|5|A|99
7OYD|1|5|C|100
7OYD|1|5|A|101
7OYD|1|5|G|102
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- L13
- Chain N
- Ribosomal protein L15
- Chain Q
- RPL18
- Chain a
- uL15
Coloring options: