IL_7OYD_038

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGACU*AGUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_038 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3679

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7OYD|1|5|G|1177
7OYD|1|5|G|1178
7OYD|1|5|A|1179
7OYD|1|5|C|1180
7OYD|1|5|U|1181
*
7OYD|1|5|A|1188
7OYD|1|5|G|1189
7OYD|1|5|U|1190
7OYD|1|5|G|1191
7OYD|1|5|C|1192

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain K

5S ribosomal RNA; 5S rRNA