3D structure

PDB id
7OYD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GG*CGCC
Length
6 nucleotides
Bulged bases
7OYD|1|5|C|1382
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OYD_041 not in the Motif Atlas
Geometric match to IL_1NBS_009
Geometric discrepancy: 0.2293
The information below is about IL_1NBS_009
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

7OYD|1|5|G|1364
7OYD|1|5|G|1365
*
7OYD|1|5|C|1380
7OYD|1|5|G|1381
7OYD|1|5|C|1382
7OYD|1|5|C|1383

Current chains

Chain 5
28S rRNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain L
L13
Chain N
Ribosomal protein L15

Coloring options:


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