IL_7OYD_049
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAG*UG(B9B)AG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_049 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.1133
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
7OYD|1|5|C|1555
7OYD|1|5|G|1556
7OYD|1|5|A|1557
7OYD|1|5|A|1558
7OYD|1|5|G|1559
*
7OYD|1|5|U|1576
7OYD|1|5|G|1577
7OYD|1|5|B9B|1578
7OYD|1|5|A|1579
7OYD|1|5|G|1580
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain p
- eL43
Coloring options: