IL_7OYD_059
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|5|G|1745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_059 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0887
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
7OYD|1|5|G|1743
7OYD|1|5|C|1744
7OYD|1|5|G|1745
7OYD|1|5|A|1746
7OYD|1|5|A|1747
7OYD|1|5|U|1748
*
7OYD|1|5|A|1790
7OYD|1|5|A|1791
7OYD|1|5|A|1792
7OYD|1|5|C|1793
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L10
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain T
- eL21
Coloring options: