IL_7OYD_063
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AC(B8H)U*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_063 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.2488
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OYD|1|5|A|1862
7OYD|1|5|C|1863
7OYD|1|5|B8H|1864
7OYD|1|5|U|1865
*
7OYD|1|5|A|1877
7OYD|1|5|A|1878
7OYD|1|5|C|1879
7OYD|1|5|U|1880
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain I
- 60S ribosomal protein L10
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain b
- 60S ribosomal protein L29
Coloring options: