IL_7OYD_070
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 7OYD|1|5|C|1939, 7OYD|1|5|G|1944, 7OYD|1|5|A|2045, 7OYD|1|5|G|2053
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_070 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2232
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|G|1937
7OYD|1|5|A|1938
7OYD|1|5|C|1939
7OYD|1|5|C|1940
7OYD|1|5|C|1941
7OYD|1|5|C|1942
7OYD|1|5|A|1943
7OYD|1|5|G|1944
7OYD|1|5|A|1945
7OYD|1|5|A|1946
7OYD|1|5|A|1947
7OYD|1|5|A|1948
*
7OYD|1|5|U|2042
7OYD|1|5|G|2043
7OYD|1|5|A|2044
7OYD|1|5|A|2045
7OYD|1|5|A|2046
7OYD|1|5|A|2047
7OYD|1|5|U|2048
7OYD|1|5|G|2049
7OYD|1|5|G|2050
7OYD|1|5|A|2051
7OYD|1|5|U|2052
7OYD|1|5|G|2053
7OYD|1|5|OMG|2054
7OYD|1|5|C|2055
7OYD|1|5|G|2056
7OYD|1|5|C|2057
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain I
- 60S ribosomal protein L10
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain O
- RPL13A
- Chain f
- eL33
- Chain m
- RPL40
Coloring options: