IL_7OYD_081

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

7OYD|1|5|A|2432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_081 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.1867

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7OYD|1|5|U|2419
7OYD|1|5|G|2420
7OYD|1|5|A|2421
7OYD|1|5|A|2422
7OYD|1|5|C|2423
*
7OYD|1|5|G|2431
7OYD|1|5|A|2432
7OYD|1|5|A|2433

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19

Chain l

eL39