IL_7OYD_090

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7OYD|1|5|U|2691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_090 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.204

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OYD|1|5|C|2650
7OYD|1|5|A|2651
7OYD|1|5|G|2652
*
7OYD|1|5|C|2689
7OYD|1|5|G|2690
7OYD|1|5|U|2691
7OYD|1|5|G|2692

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

60S ribosomal protein L34