IL_7OYD_096
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 7OYD|1|5|G|3843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_096 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.0924
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|A|2854
7OYD|1|5|G|2855
7OYD|1|5|U|2856
7OYD|1|5|C|2857
7OYD|1|5|G|2858
7OYD|1|5|G|2859
*
7OYD|1|5|C|3841
7OYD|1|5|U|3842
7OYD|1|5|G|3843
7OYD|1|5|U|3844
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain V
- Ribosomal protein L23
Coloring options: