IL_7OYD_097
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 7OYD|1|5|U|2884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_097 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.0739
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|2871
7OYD|1|5|G|2872
7OYD|1|5|U|2873
7OYD|1|5|A|2874
7OYD|1|5|A|2875
7OYD|1|5|C|2876
*
7OYD|1|5|G|2881
7OYD|1|5|G|2882
7OYD|1|5|A|2883
7OYD|1|5|U|2884
7OYD|1|5|A|2885
7OYD|1|5|A|2886
7OYD|1|5|G|2887
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 9
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
- Chain p
- eL43
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