IL_7OYD_117
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_117 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.0957
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|4247
7OYD|1|5|A|4248
7OYD|1|5|G|4249
*
7OYD|1|5|C|4267
7OYD|1|5|G|4268
7OYD|1|5|U|4269
7OYD|1|5|G|4270
7OYD|1|5|G|4271
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain J
- Ribosomal protein L11
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain T
- eL21
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