IL_7OYD_120
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GACC*GC
- Length
- 6 nucleotides
- Bulged bases
- 7OYD|1|5|C|4353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_120 not in the Motif Atlas
- Geometric match to IL_5J7L_032
- Geometric discrepancy: 0.2488
- The information below is about IL_5J7L_032
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_26793.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 16
Unit IDs
7OYD|1|5|G|4351
7OYD|1|5|A|4352
7OYD|1|5|C|4353
7OYD|1|5|C|4354
*
7OYD|1|5|G|4368
7OYD|1|5|C|4369
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- L13
- Chain Q
- RPL18
- Chain a
- uL15
- Chain o
- RPL36A
Coloring options: