IL_7OYD_122

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7OYD|1|5|U|4441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_122 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.084

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OYD|1|5|G|4409
7OYD|1|5|U|4410
7OYD|1|5|G|4411
*
7OYD|1|5|U|4439
7OYD|1|5|U|4440
7OYD|1|5|U|4441
7OYD|1|5|U|4442
7OYD|1|5|U|4443

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain I

60S ribosomal protein L10

Chain s1

Dap1b