IL_7OYD_125

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

7OYD|1|5|G|4526

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_125 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0875

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OYD|1|5|C|4460
7OYD|1|5|U|4461
7OYD|1|5|C|4462
*
7OYD|1|5|G|4524
7OYD|1|5|U|4525
7OYD|1|5|G|4526
7OYD|1|5|A2M|4527
7OYD|1|5|G|4528

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

Ribosomal protein L23

Chain s1

Dap1b