IL_7OYD_128

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

7OYD|1|5|A|4492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_128 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3865

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7OYD|1|5|U|4472
7OYD|1|5|U|4473
7OYD|1|5|G|4474
*
7OYD|1|5|C|4489
7OYD|1|5|C|4490
7OYD|1|5|A|4491
7OYD|1|5|A|4492
7OYD|1|5|G|4493

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

RPL40