IL_7OYD_137

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

7OYD|1|5|U|4638

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_137 not in the Motif Atlas

Geometric match to IL_3GS8_001

Geometric discrepancy: 0.3958

The information below is about IL_3GS8_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80926.1

Basepair signature

cWW-cWW-tSH-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

7OYD|1|5|U|4636
7OYD|1|5|G|4637
7OYD|1|5|U|4638
7OYD|1|5|A|4639
7OYD|1|5|PSU|4640
7OYD|1|5|OMG|4641
7OYD|1|5|U|4642
*
7OYD|1|5|G|4665
7OYD|1|5|C|4666
7OYD|1|5|G|4667
7OYD|1|5|A|4668
7OYD|1|5|A|4669
7OYD|1|5|G|4670

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31