IL_7OYD_140

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7OYD|1|5|A|4712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_140 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2399

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7OYD|1|5|G|4684
7OYD|1|5|A|4685
7OYD|1|5|U|4686
7OYD|1|5|U|4687
7OYD|1|5|A|4688
7OYD|1|5|U|4689
*
7OYD|1|5|A|4709
7OYD|1|5|G|4710
7OYD|1|5|A|4711
7OYD|1|5|A|4712
7OYD|1|5|U|4713
7OYD|1|5|C|4714

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

RPL13A

Chain m

RPL40