IL_7OYD_143
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCUCGGAUAGC*GU(OMG)C(2MG)GAGAG
- Length
- 21 nucleotides
- Bulged bases
- 7OYD|1|5|C|4761, 7OYD|1|5|U|4762, 7OYD|1|5|A|4768, 7OYD|1|5|G|4877, 7OYD|1|5|A|4878, 7OYD|1|5|A|4880
- QA status
- Modified nucleotides: OMG, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_143 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5654
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|5|C|4760
7OYD|1|5|C|4761
7OYD|1|5|U|4762
7OYD|1|5|C|4763
7OYD|1|5|G|4764
7OYD|1|5|G|4765
7OYD|1|5|A|4766
7OYD|1|5|U|4767
7OYD|1|5|A|4768
7OYD|1|5|G|4769
7OYD|1|5|C|4770
*
7OYD|1|5|G|4872
7OYD|1|5|U|4873
7OYD|1|5|OMG|4874
7OYD|1|5|C|4875
7OYD|1|5|2MG|4876
7OYD|1|5|G|4877
7OYD|1|5|A|4878
7OYD|1|5|G|4879
7OYD|1|5|A|4880
7OYD|1|5|G|4881
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- RPL13A
- Chain S
- RPL18A
Coloring options: