IL_7OYD_184

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UC(E3C)A*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: E3C

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_184 not in the Motif Atlas

Geometric match to IL_7LO9_004

Geometric discrepancy: 0.2617

The information below is about IL_7LO9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36940.4

Basepair signature

cWW-tSH-tWW-cWW

Number of instances in this motif group

5

Unit IDs

7OYD|1|9|U|566
7OYD|1|9|C|567
7OYD|1|9|E3C|568
7OYD|1|9|A|569
*
7OYD|1|9|U|581
7OYD|1|9|U|582
7OYD|1|9|A|583
7OYD|1|9|A|584

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

40S ribosomal protein S24