IL_7OYD_185
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGGGCAAGUC*GCU
- Length
- 13 nucleotides
- Bulged bases
- 7OYD|1|9|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_185 not in the Motif Atlas
- Geometric match to IL_7A0S_092
- Geometric discrepancy: 0.2926
- The information below is about IL_7A0S_092
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_08770.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|9|A|599
7OYD|1|9|G|600
7OYD|1|9|G|601
7OYD|1|9|G|602
7OYD|1|9|C|603
7OYD|1|9|A|604
7OYD|1|9|A|605
7OYD|1|9|G|606
7OYD|1|9|U|607
7OYD|1|9|C|608
*
7OYD|1|9|G|635
7OYD|1|9|C|636
7OYD|1|9|U|637
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain CC
- RPS2
- Chain DD
- Ribosomal protein S3
- Chain Ee
- 40S ribosomal protein S30
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- RPS23
- Chain w
- SERPINE1 mRNA binding protein 1
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