IL_7OYD_188

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_188 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1548

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7OYD|1|9|G|665
7OYD|1|9|U|666
7OYD|1|9|U|667
7OYD|1|9|A2M|668
7OYD|1|9|A|669
7OYD|1|9|A|670
7OYD|1|9|A|671
*
7OYD|1|9|U|1161
7OYD|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

RPS26

Chain XX

RPS23