IL_7OYD_194

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_194 not in the Motif Atlas

Geometric match to IL_4V88_423

Geometric discrepancy: 0.1205

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

7OYD|1|9|A|802
7OYD|1|9|C|803
*
7OYD|1|9|G|860
7OYD|1|9|A|861
7OYD|1|9|A|862
7OYD|1|9|U|863

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S7

Chain LL

40S ribosomal protein S11

Chain WW

Ribosomal protein S15a

Chain XX

RPS23