IL_7OYD_196
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAAAAA(5MU)U*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_196 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2477
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7OYD|1|9|G|807
7OYD|1|9|A|808
7OYD|1|9|A|809
7OYD|1|9|A|810
7OYD|1|9|A|811
7OYD|1|9|A|812
7OYD|1|9|A|813
7OYD|1|9|5MU|814
7OYD|1|9|U|815
*
7OYD|1|9|A|849
7OYD|1|9|C|850
7OYD|1|9|C|851
7OYD|1|9|G|852
7OYD|1|9|C|853
7OYD|1|9|A|854
7OYD|1|9|G|855
7OYD|1|9|C|856
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain LL
- 40S ribosomal protein S11
- Chain WW
- Ribosomal protein S15a
Coloring options: