IL_7OYD_208

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_208 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.1303

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7OYD|1|9|C|1098
7OYD|1|9|G|1099
7OYD|1|9|A|1100
7OYD|1|9|U|1101
*
7OYD|1|9|G|1131
7OYD|1|9|C|1132
7OYD|1|9|A|1133
7OYD|1|9|G|1134

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain Aa

RPS26

Chain BB

40S ribosomal protein S3a

Chain NN

uS15

Chain RR

40S ribosomal protein eS17