IL_7OYD_225

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_225 not in the Motif Atlas

Geometric match to IL_4V88_453

Geometric discrepancy: 0.1663

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7OYD|1|9|U|1347
7OYD|1|9|G|1348
7OYD|1|9|G|1349
*
7OYD|1|9|C|1380
7OYD|1|9|G|1381
7OYD|1|9|A|1382

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain CC

RPS2

Chain DD

Ribosomal protein S3

Chain RR

40S ribosomal protein eS17