IL_7OYD_227
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 7OYD|1|9|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_227 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3487
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OYD|1|9|C|1395
7OYD|1|9|A|1396
7OYD|1|9|U|1397
7OYD|1|9|G|1398
7OYD|1|9|C|1399
*
7OYD|1|9|G|1447
7OYD|1|9|A|1448
7OYD|1|9|G|1449
7OYD|1|9|G|1450
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain Gg
- RACK1
- Chain QQ
- Ribosomal protein S16
- Chain RR
- 40S ribosomal protein eS17
- Chain UU
- 40S ribosomal protein uS10
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