IL_7OYD_230
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OYD_230 not in the Motif Atlas
- Geometric match to IL_4P3T_001
- Geometric discrepancy: 0.1234
- The information below is about IL_4P3T_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
7OYD|1|9|A|1537
7OYD|1|9|C|1538
7OYD|1|9|U|1539
*
7OYD|1|9|A|1594
7OYD|1|9|U|1595
7OYD|1|9|U|1596
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain FF
- Ribosomal protein S5
- Chain QQ
- Ribosomal protein S16
- Chain SS
- 40S ribosomal protein uS13
- Chain TT
- RPS19
- Chain ZZ
- 40S ribosomal protein S25
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