IL_7OYD_234

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7OYD|1|9|C|1701, 7OYD|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_234 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2172

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7OYD|1|9|C|1700
7OYD|1|9|C|1701
7OYD|1|9|G|1702
*
7OYD|1|9|C|1833
7OYD|1|9|A|1834
7OYD|1|9|A|1835
7OYD|1|9|G|1836

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

RPS26

Chain CC

RPS2

Chain w

SERPINE1 mRNA binding protein 1