IL_7OYD_240

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7OYD|1|9|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OYD_240 not in the Motif Atlas

Homologous match to IL_8C3A_476

Geometric discrepancy: 0.4299

The information below is about IL_8C3A_476

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7OYD|1|9|U|1720
7OYD|1|9|U|1721
7OYD|1|9|G|1722
*
7OYD|1|9|U|1812
7OYD|1|9|A|1813

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain V

Ribosomal protein L23

Chain XX

RPS23

Chain n

60s ribosomal protein l41